Research output

Publications & Talks

Pharmacometrics, precision dosing and quantitative biomedical research.

Selected peer-reviewed publications

2026

Better Dosing Through Better Error: Residual Error as a Hidden Lever in Model-Informed Precision Dosing

Berrah R, Minichmayr I, Woillard JB.

On behalf of the IATDMCT Pharmacometrics Group.

Therapeutic Drug Monitoring, 2026. 48(4):443-450. First published online 8 December 2025.

Abstract & context

Abstract summary

Question. How much does the residual-error setting influence Bayesian estimates of drug exposure when only a few concentrations are available?

Approach. The study evaluated 321 rich concentration profiles covering tacrolimus, iohexol and mycophenolate mofetil. Three-point Bayesian estimates were compared using the published error model, 1% proportional error and a near-zero setting.

Findings. Lower error settings improved AUC precision in these datasets. For tacrolimus, relative RMSE decreased from 28.5% to 16.3% with the 1% setting. Giving observations more weight can therefore materially change individual exposure estimates.

Interpretation. These findings concern the evaluated drugs, models and sampling designs; they are not a universal instruction to remove residual error. Individual fits and predictive performance still require examination.

Paraphrased from the published abstract. Read the original abstract.

2026

Human serum albumin profiling by top-down analysis enables multi-class liver fibrosis staging: a cross-platform validation study

El Balkhi S, Berrah R, Sauvage FL, Le Du L, Rahali MA, Lakis R, Marquet P, Saint-Marcoux F, Loustaud-Ratti V, Carrier P.

Souleiman El Balkhi and Racym Berrah contributed equally.

Scientific Reports, 2026. 16:27911.

Abstract & context

Abstract summary

Question. Can the molecular forms of circulating albumin help distinguish stages of chronic liver disease, beyond its total concentration?

Approach. High-resolution mass spectrometry measured native albumin and nine modified forms in 172 patients and 82 controls. A machine-learning classifier used the albumin spectral profile, with measurements compared across two manufacturers' instruments.

Findings. Albumin patterns changed with disease severity. Classification accuracy was 81.5%, compared with 59.3% for FIB-4, and the analytical findings were reproducible across the two platforms within the study cohort.

Interpretation. Cross-platform reproducibility supports further development of this biomarker. It should not be confused with independent, multicentre clinical validation of a diagnostic service.

Paraphrased from the published abstract. Read the original abstract.

2025

From AUC/MIC to AUCss and Cmin: Optimizing Micafungin Therapy in the Critically Ill through Model-Informed Precision Dosing

Berrah R, Saint-Marcoux F, Monchaud C, Cointault O, Conseil M, Jaber S, Jung B, Woillard JB.

The AAPS Journal, 2025. 28(1):18. Published online 11 November 2025.

Abstract & context

Abstract summary

Question. Could exposure alone provide useful monitoring indices when an organism's minimum inhibitory concentration is unavailable or insufficiently informative?

Approach. A two-compartment population model was developed from rich sampling in 60 critically ill adults. Total bilirubin was associated with clearance; microbiological outcomes were evaluable in 30 patients.

Findings. Steady-state AUC and trough concentration showed stronger associations with eradication than AUC/MIC in this cohort. Exploratory thresholds of 90.15 mg·h/L for AUC and 1.22 mg/L for trough concentration were associated with faster eradication.

Interpretation. These are exploratory, cohort-derived associations, not universally validated treatment targets. Prospective confirmation is needed before generalising the thresholds.

Paraphrased from the published abstract. Read the original abstract.

2025

Dosing and route of administration of clindamycin given in combination with rifampicin

Magréault S, Berrah R, Kerroumi Y, Mimram L, Salmon D, Goulenok T, de la Selle A, Lefort A, Marmor S, El Helali N, Zeller V, Jullien V.

Clinical Microbiology and Infection, 2025. 31(5):832-838.

Abstract & context

Abstract summary

Question. How does rifampicin alter clindamycin exposure, and does the administration route change the ability to attain PK/PD targets?

Approach. The population analysis used 518 samples from 124 patients treated for bone and joint infections. Simulations compared oral treatment, intermittent intravenous dosing and continuous infusion.

Findings. Rifampicin increased clindamycin clearance approximately threefold and markedly reduced oral bioavailability. Oral regimens did not achieve satisfactory exposure in the evaluated scenarios; continuous infusion performed better than intermittent intravenous administration for trough-based targets.

Interpretation. The interaction affects both absorption-related exposure and elimination. Predicted target attainment depends on administration route, regimen and organism susceptibility; it is not itself proof of clinical effectiveness.

Paraphrased from the published abstract. Read the original abstract.

Correspondence

2025

'Dosing and route of administration of clindamycin given in combination with rifampicin'-author's reply

Magréault S, Berrah R, Kerroumi Y, Mimram L, Salmon D, Goulenok T, de la Selle A, Lefort A, Marmor S, El Helali N, Zeller V, Jullien V.

Clinical Microbiology and Infection, 2025. 31(11):1933-1934. Letter.

Context & correspondence

Correspondence context

This letter is the authors' reply concerning the clindamycin–rifampicin study listed above. PubMed does not provide an abstract, so no abstract or additional study results are reconstructed here.

Bibliographic source · Read the correspondence · Related study summary

Talks & posters

2026 · Poster

PEPR Santé Numérique — Journées annuelles 2026

Presentation: 14 October 2026 · Event: 13-15 October 2026 · Marseille, France

NetPK: fusing published biological knowledge into pharmacokinetic models through network diffusion

Berrah R, Marquet P, Woillard JB.

Poster details, PDF and slides

2026 · Oral communications

IATDMCT & SFPT 2026

Rennes, France · 27-30 September 2026

  • Oral communication

    TacDDI: A precision dosing tool integrating Bayesian estimation to manage complex drug-drug interactions

    Abstract & study context

    DDI Manager: a Dynamic Model-Informed Precision Dosing Tool for Managing Tacrolimus-Voriconazole and Azole Drug-Drug Interactions

    Berrah R, Woillard JB, Labriffe M, Baklouti S, Gandia P, Couzi L, Bouchet S, Marquet P, Monchaud C.

    Abstract

    Tacrolimus has a narrow therapeutic index and interacts strongly with azole antifungals, yet conventional dose‑adjustment rules provide only steady‑state estimates and cannot capture the time course of the interaction, including its onset and the delayed recovery of enzyme activity after the azole is withdrawn. We developed DDI Manager, a model‑informed precision dosing web application combining a tacrolimus population pharmacokinetic model, mechanistic interaction equations, and maximum a posteriori Bayesian estimation to forecast tacrolimus exposure over time.

    We report the development and external clinical validation of the tacrolimus–voriconazole module. Four candidate interaction structures were evaluated against retrospective and prospective multicenter cohorts; the retained module combines time‑dependent CYP3A4 inactivation with competitive CYP3A5 inhibition, with apparent in‑vivo constants calibrated so that the assembled model reproduces the exposure ratio of the prescribing information (predicted AUC ratio 3.20 versus 3.2). Performance was resolved jointly by interaction phase (baseline, wash‑in, plateau, withdrawal) and by the information available at the time of prediction, from no concentration at all to every earlier concentration. Phase boundaries were read off the model rather than chosen. Each cell was compared, on the same observations and with the same information, against three sourced static rules, a no‑interaction negative control, and the last measured trough rescaled for dose.

    The evaluation set comprised 394 trough concentrations from 30 transplant recipients in three cohorts. The benefit of dynamic forecasting was real, statistically supported, and confined to the wash‑in period: 80.6% of predictions fell within 2‑fold and the model beat all five comparators with confidence intervals excluding zero (+25.0 points versus the no‑interaction control, +30.6 versus the ×3.03 rule of the prescribing information, +50.0 versus the ×4.40 observed ratio, +58.3 versus the ×9.24 DDI‑Predictor prediction, and +38.9 versus the last measured trough). At plateau it held no advantage (0.0 points versus the ×3.03 rule, 95% CI -20.6 to +16.5) and over‑predicted exposure about 1.7‑fold; after withdrawal, within the 14‑day re‑escalation window, the adaptive mode reached 66.7% versus 33.3% within 2‑fold. Neither baseline nor sequential Bayesian updating corrected the plateau bias, identifying it as structural rather than a failure of individualization. Pooling phases averages a period where the model genuinely wins with one where it over‑predicts, and returns a near‑unity ratio by cancellation.

    Given the narrow therapeutic index of tacrolimus, the tool is intended to support, alongside close therapeutic drug monitoring, anticipatory individualized dose adjustment during complex interaction transitions.

    Study context

    The clinical evaluation described here concerns the tacrolimus–voriconazole module, not every interaction available in the application. The manuscript reports 394 trough measurements from 30 transplant recipients and compares forecasts using the same observations and available information.

    The clearest supported advantage is during wash-in. At plateau, the model has no advantage over a static rule and overpredicts exposure. The smaller withdrawal analysis must be interpreted separately. These research findings do not replace close therapeutic drug monitoring.

    Source: author-provided manuscript; the working presentation was used for context only. This is not the official conference abstract. Text and results may change before publication.

  • Oral communication

    Beyond ‘Skip or Take’: Evidence-Based Missed-Dose Guidance Using PopPK Simulations

    Abstract & study context

    How to Handle Missed and Delayed Oral Doses: A Universal Population Half-Life Rule

    Berrah R, Monchaud C, Humeau A, Woillard JB, Marquet P.

    Abstract

    Instructions for delayed or missed oral doses are often binary, heterogeneous, and not pharmacokinetically grounded. We evaluated a universal catch-up rule based on the delay, usual dosing interval, and population elimination half-life. Published population pharmacokinetic models for 11 oral drugs spanning half-lives from 1 to 1,392 hours were used to simulate 1,000 virtual patients per drug at steady state. Six delays (10%, 20%, 33%, 50%, 75%, and 100% of the dosing interval) were evaluated. The rule calculated a fractional catch-up dose and conservatively rounded it down to an available dose increment; comparators were product-information instructions and systematic dose omission. The primary outcome was attainment of a post-event area under the concentration-time curve ratio of 0.80-1.25 relative to steady state.

    Across all drugs and delays, mean target attainment was 97.7% with the half-life rule, 81.7% with product-information instructions, and 61.6% with dose omission. The half-life rule achieved 100% target attainment through delays of 50% of the dosing interval without maximum-concentration ratios above 1.25. At a complete missed dose, transient peak overexposure occurred in selected rapid-absorption models but did not persist into the subsequent interval. Trough recovery was also improved at moderate-to-severe delays.

    A population half-life rule can provide a transparent, graded alternative to binary missed-dose advice, but complete missed doses and drugs with peak-related toxicity require drug-specific safeguards and prospective clinical validation.

    Study context

    The reported target-attainment percentages describe virtual patients and a model-defined exposure window, not observed clinical benefit. The analysis includes 11 oral drug/formulation models, including three tacrolimus formulations; this is not 11 distinct active substances.

    The rule has not been prospectively validated in patients. Fully missed doses, peak-related toxicity and available dosage strengths require specific safeguards. Do not use this research summary as personal catch-up dosing advice.

    Source: author-provided submission manuscript; the working presentation was used for context only. This is not the official conference abstract. Text and results may change before publication.

Conference programme

2026 · Poster I-084

PAGE 2026

Dubrovnik, Croatia · 2-5 June 2026

Toward autonomous pharmacometrics: a multi agent framework for structure discovery, covariate selection and gray-box modeling

Berrah R, Woillard JB.

Conference abstract
Abstract & context

Conference abstract summary

Question. Can local language-model agents assist with population PK structure discovery and covariate selection while remaining accountable to numerical estimation?

Approach. An architect agent and a coding agent work with a PyTorch SAEM engine and numerical safeguards. Tests included theophylline, simulated tacrolimus profiles and clinical data.

Findings. The proof of concept recovered the simulated tacrolimus structure and rejected a deliberately irrelevant covariate. However, generated code could still fail, and computation was substantially slower than the Monolix benchmark.

Interpretation. This is an exploratory modelling framework, not an autonomous replacement for expert model evaluation. More robust execution safeguards and faster estimation remain development priorities.

Paraphrased from PAGE 2026, abstract 11937, poster I-084.

2025 · Poster I-034

PAGE 2025

Thessaloniki, Greece · 4-6 June 2025

Impact of Residual Error Handling on Model Informed Precision Dosing and AUC Calculation: A Case Study with Tacrolimus

Conference abstract
Abstract & context

Conference abstract summary

Question. How do residual-error assumptions influence tacrolimus AUC estimation and individual Bayesian fits?

Approach. Data from two tacrolimus studies were analysed with mrgsolve and mapbayr, comparing the original 11% proportional error, a 5% setting and zero error.

Findings. Zero error sometimes produced implausible individual parameter estimates despite close agreement with measured concentrations. AUC estimates differed between settings, while overall absolute bias and RMSE remained comparable.

Interpretation. The poster highlights the need to inspect individual fits. Its datasets and error settings differ from the later multi-drug publication, so their conclusions should not be treated as interchangeable.

Paraphrased from PAGE 2025, abstract 11344, poster I-034. Related later article: Better Dosing Through Better Error.